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A Coffee with CompBio

A Coffee with CompBio

Fast, Private, and Publish-Ready Spatial Transcriptomics App (Without Losing Your Mind)

· 27 min · Season 1 Episode 4

Show notes

In this episode, we journey through the real-life challenges of building interactive single cell spatial data visualizations for large projects. Lorena shares her recent adventure turning mountains of data into a web app using tools like Python, R, and the (tricky-to-pronounce) single-cell viewer Vitessce. She discusses the hurdles of image cropping, memory limits, Python-R crossovers, and why “just putting it online” isn’t as easy as it sounds—especially when it comes to privacy, deployment, and avoiding surprise cloud bills.If you’ve ever had a collaborator say, “Can you just build me an…

Website: podcast.ausha.co

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