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A Coffee with CompBio

A Coffee with CompBio

R Markdown: Because RNA-seq Code Shouldn't Be Wild-Type

· 22 min · Season 1 Episode 3

Show notes

Alex and Lorena discuss a large bulk RNA-seq project that yielded lasting changes to their group’s everyday bioinformatics practices via the creation of parameterized R Markdown code templates. In the “Quick Sip” segment, they discuss reticulate for managing python environments in an R context, and in “Brewing Up Answers”, they reflect on the differences between industry and academia bioinformatics.

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